EpiExplorer: live exploration and global analysis of large epigenomic datasets
نویسندگان
چکیده
منابع مشابه
Interactive Exploration on Large Genomic Datasets.
The prevalence of large genomics datasets has made the the need to explore this data more important. Large sequencing projects like the 1000 Genomes Project [1], which reconstructed the genomes of 2,504 individuals sampled from 26 populations, have produced over 200TB of publically available data. Meanwhile, existing genomic visualization tools have been unable to scale with the growing amount ...
متن کاملAn Interactive Analysis and Exploration Tool for Epigenomic Data
In this design study, we present an analysis and abstraction of the data and tasks related to the domain of epigenomics, and the design and implementation of an interactive tool to facilitate data analysis and visualization in this domain. Epigenomic data can be grouped into subsets either by k-means clustering or by querying for combinations of presence or absence of signal (on/off) in differe...
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DEVise is a data exploration system that allows users to easily develop, browse, and share visual presentations of large tabular datasets (possibly containing or referencing multi-media objects) from several sources. The DEVise framework , implemented in a tool that has been already successfully applied to a variety of real applications by a number of user groups, makes several contributions. I...
متن کاملDEVise: Integrated Querying and Visual Exploration of Large Datasets
DEVise is a data exploration system that allows users to easily develop, browse, and share visual presentations of large tabular datasets (possibly containing or referencing multimedia objects) from several sources. The DEVise framework is being implemented in a tool that has been already successfully applied to a variety of real applications by a number of user groups. Our emphasis is on devel...
متن کاملDeepBlueR: large-scale epigenomic analysis in R
Motivation While large amounts of epigenomic data are publicly available, their retrieval in a form suitable for downstream analysis is a bottleneck in current research. The DeepBlue Epigenomic Data Server provides a powerful interface and API for filtering, transforming, aggregating and downloading data from several epigenomic consortia. Results To make public epigenomic data conveniently av...
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ژورنال
عنوان ژورنال: Genome Biology
سال: 2012
ISSN: 1465-6906
DOI: 10.1186/gb-2012-13-10-r96